CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F2_H12_2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F2_H12_2012 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 115.10 cM
Features by Type:
94 SNP
94 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 94.       of 4 | Next
Pinus pinaster - F2_H12_2012 - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m185 SNP 0.00 Pinus pinaster - INRA_composite_2012 - LG11 m185 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M m185 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m185 SNP 5.24 (cM) Automated name-based View Maps
BX677559 SNP 0.05 Pinus pinaster - INIA_composite_2012 - LG11 BX677559 SNP 8.91 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX677559 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX677559 SNP 5.24 (cM) Automated name-based View Maps
BX682661 SNP 2.64 Pinus pinaster - INRA_composite_2012 - LG11 BX682661 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M BX682661 (0/13.5) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX682661 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F BX682661 (4/10) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX682661 SNP 10.09 (cM) Automated name-based View Maps
BX253174 SNP 4.28 Pinus pinaster - INRA_composite_2012 - LG11 BX253174 SNP 2.59 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 BX253174 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX253174 SNP 3.42 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M BX253174 SNP 0.00 (cM) Automated name-based View Maps
F51TW9001BQP4G SNP 5.10 Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001BQP4G SNP 8.54 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BQP4G SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BQP4G SNP 5.05 (cM) Automated name-based View Maps
SNPnew124 SNP 10.20 Pinus pinaster - INIA_INRA2012 - LG11 SNPnew124 SNP 4.82 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 SNPnew124 SNP 10.15 (cM) Automated name-based View Maps
SNPnew125 SNP 10.45 Pinus pinaster - INIA_INRA2012 - LG11 SNPnew125 SNP 5.07 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 SNPnew125 SNP 10.40 (cM) Automated name-based View Maps
BX250565 SNP 10.82 Pinus pinaster - INIA_INRA2012 - LG11 BX250565 SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX250565 SNP 10.76 (cM) Automated name-based View Maps
F51TW9001B38OL SNP 11.41 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001B38OL SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M F51TW9001B38OL (5/9) SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001B38OL SNP 11.36 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F F51TW9001B38OL (2.5/10) SNP 8.99 (cM) Automated name-based View Maps
m218 SNP 11.62 Pinus pinaster - INIA_INRA2012 - LG11 m218 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 m218 SNP 11.86 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F m218 SNP 9.27 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 m218 SNP 16.74 (cM) Automated name-based View Maps
m219 SNP 11.66 Pinus pinaster - G2_G2F_2012 - LG11F m219 SNP 9.02 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 m219 SNP 11.61 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 m219 SNP 16.74 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m219 SNP 5.29 (cM) Automated name-based View Maps
CT580852 SNP 11.84 Pinus pinaster - INIA_INRA2012 - LG11 CT580852 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT580852 SNP 11.79 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 CT580852 SNP 17.96 (cM) Automated name-based View Maps
F51TW9001A45MK SNP 11.84 Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001A45MK SNP 5.24 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F F51TW9001A45MK SNP 8.99 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001A45MK SNP 11.58 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001A45MK SNP 16.74 (cM) Automated name-based View Maps
BX254138 SNP 12.72 Pinus pinaster - INIA_INRA2012 - LG11 BX254138 SNP 5.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX254138 SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX254138 SNP 16.74 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M BX254138 SNP 17.65 (cM) Automated name-based View Maps
CT577155 SNP 15.08 Pinus pinaster - INRA_composite_2012 - LG11 CT577155 SNP 12.67 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT577155 SNP 12.10 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 CT577155 SNP 19.31 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M CT577155 (0/12) SNP 17.65 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F CT577155 (0/11.5) SNP 13.72 (cM) Automated name-based View Maps
AL750179 SNP 20.03 Pinus pinaster - INIA_composite_2012 - LG11 AL750179 SNP 20.02 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M AL750179 SNP 20.26 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 AL750179 SNP 16.29 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 AL750179 SNP 16.82 (cM) Automated name-based View Maps
F51TW9001BO6SO SNP 22.14 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001BO6SO SNP 18.93 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001BO6SO SNP 18.40 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F F51TW9001BO6SO SNP 16.27 (cM) Automated name-based View Maps
CT575586 SNP 23.28 Pinus pinaster - INRA_composite_2012 - LG11 CT575586 SNP 20.07 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 CT575586 SNP 21.62 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F CT575586 SNP 17.49 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 CT575586 SNP 27.15 (cM) Automated name-based View Maps
CT581353 SNP 30.78 Pinus pinaster - INIA_INRA2012 - LG11 CT581353 SNP 28.22 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 CT581353 SNP 26.67 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F CT581353 SNP 21.16 (cM) Automated name-based View Maps
SNPnew32 SNP 33.21 Pinus pinaster - INRA_composite_2012 - LG11 SNPnew32 SNP 29.09 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 SNPnew32 SNP 30.64 (cM) Automated name-based View Maps
BX253098 SNP 34.13 Pinus pinaster - INIA_INRA2012 - LG11 BX253098 SNP 31.57 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M BX253098 SNP 33.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 BX253098 SNP 30.02 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 BX253098 SNP 36.49 (cM) Automated name-based View Maps
F51TW9001ANSLB SNP 38.81 Pinus pinaster - G2_G2M_2012 - LG11M F51TW9001ANSLB (0/13) SNP 40.78 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG11F F51TW9001ANSLB (0/13) SNP 28.54 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001ANSLB SNP 38.35 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001ANSLB SNP 33.85 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001ANSLB SNP 34.64 (cM) Automated name-based View Maps
F51TW9002GU2AK SNP 42.30 Pinus pinaster - INRA_composite_2012 - LG11 F51TW9002GU2AK SNP 37.34 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2M_2012 - LG11M F51TW9002GU2AK SNP 40.78 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9002GU2AK SNP 43.07 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9002GU2AK SNP 38.44 (cM) Automated name-based View Maps
m561 SNP 42.74 Pinus pinaster - G2_G2M_2012 - LG11M m561 SNP 40.80 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 m561 SNP 37.36 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 m561 SNP 38.44 (cM) Automated name-based View Maps
F51TW9001APGAL SNP 43.13 Pinus pinaster - G2_G2F_2012 - LG11F F51TW9001APGAL SNP 27.29 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG11 F51TW9001APGAL SNP 39.29 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG11 F51TW9001APGAL SNP 38.44 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG11 F51TW9001APGAL SNP 37.75 (cM) Automated name-based View Maps

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