CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_12K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 89.18 cM
Features by Type:
17 SNP
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp3810 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp3810 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp3810 SNP 2.21 (cM) Automated name-based View Maps
9k_snp5627 SNP 8.84 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5627 SNP 7.50 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp5627 SNP 16.97 (cM) Automated name-based View Maps
9k_snp6632 SNP 17.96 No other positions
9k_snp7607 SNP 24.91 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp7607 SNP 33.96 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp7607 SNP 50.43 (cM) Automated name-based View Maps
9k_snp2441 SNP 36.73 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp2441 SNP 56.86 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp2441 SNP 34.74 (cM) Automated name-based View Maps
9k_snp6111 SNP 37.42 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp6111 SNP 64.56 (cM) Automated name-based View Maps
9k_snp2906 SNP 39.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp2906 SNP 67.87 (cM) Automated name-based View Maps
9k_snp8325 SNP 44.29 No other positions
9k_snp194 SNP 45.56 Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG11 9k_snp194 SNP 17.37 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp194 SNP 43.35 (cM) Automated name-based View Maps
9k_snp7154 SNP 50.96 Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG11 9k_snp7154 SNP 0.00 (cM) Automated name-based View Maps
9k_snp3538 SNP 52.54 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp3538 SNP 50.13 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp3538 SNP 99.10 (cM) Automated name-based View Maps
9k_snp6701 SNP 55.46 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp6701 SNP 104.36 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp6701 SNP 54.70 (cM) Automated name-based View Maps
9k_snp6782 SNP 71.37 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp6782 SNP 121.87 (cM) Automated name-based View Maps
9k_snp5682 SNP 71.41 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp5682 SNP 121.87 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5682 SNP 73.15 (cM) Automated name-based View Maps
9k_snp5194 SNP 81.09 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp5194 SNP 126.89 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5194 SNP 81.78 (cM) Automated name-based View Maps
9k_snp6772 SNP 83.32 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp6772 SNP 138.96 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp6772 SNP 85.76 (cM) Automated name-based View Maps
9k_snp2325 SNP 89.18 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11 9k_snp2325 SNP 150.98 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp2325 SNP 93.57 (cM) Automated name-based View Maps

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