CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexMaroc_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 160.37 cM
Features by Type:
58 SNP
58 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 58.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp6028 SNP 0.00 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp6028 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp6028 SNP 0.00 (cM) Automated name-based View Maps
9k_snp3723 SNP 2.15 No other positions
9k_snp8836 SNP 2.15 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp8836 SNP 5.89 (cM) Automated name-based View Maps
9k_snp2479 SNP 8.78 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp2479 SNP 6.10 (cM) Automated name-based View Maps
9k_snp347 SNP 19.08 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp347 SNP 15.73 (cM) Automated name-based View Maps
9k_snp3370 SNP 27.96 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp3370 SNP 22.44 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp3370 SNP 25.85 (cM) Automated name-based View Maps
9k_snp3308 SNP 34.78 No other positions
9k_snp5257 SNP 40.50 No other positions
9k_snp4303 SNP 47.89 No other positions
9k_snp5203 SNP 59.19 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp5203 SNP 35.82 (cM) Automated name-based View Maps
9k_snp6639 SNP 78.44 No other positions
9k_snp5834 SNP 78.44 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp5834 SNP 47.13 (cM) Automated name-based View Maps
9k_snp8257 SNP 85.05 No other positions
9k_snp1457 SNP 86.07 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp1457 SNP 61.86 (cM) Automated name-based View Maps
9k_snp7207 SNP 86.09 No other positions
9k_snp1070 SNP 87.06 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp1070 SNP 54.29 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp1070 SNP 57.48 (cM) Automated name-based View Maps
9k_snp7935 SNP 89.13 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp7935 SNP 58.42 (cM) Automated name-based View Maps
9k_snp7719 SNP 92.21 No other positions
9k_snp5250 SNP 99.43 No other positions
9k_snp1102 SNP 101.58 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp1102 SNP 70.28 (cM) Automated name-based View Maps
9k_snp2895 SNP 105.55 No other positions
9k_snp3703 SNP 109.23 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp3703 SNP 78.73 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG1 9k_snp3703 SNP 76.41 (cM) Automated name-based View Maps
9k_snp7011 SNP 109.23 No other positions
9k_snp3854 SNP 112.09 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG1 9k_snp3854 SNP 78.73 (cM) Automated name-based View Maps
9k_snp1330 SNP 113.87 No other positions

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