CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexMaroc_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 150.98 cM
Features by Type:
65 SNP
65 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 65.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp2925 SNP 0.00 No other positions
9k_snp3810 SNP 2.21 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG11 9k_snp3810 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp3810 SNP 0.00 (cM) Automated name-based View Maps
9k_snp6878 SNP 3.32 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp6878 SNP 4.72 (cM) Automated name-based View Maps
9k_snp8089 SNP 3.32 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp8089 SNP 4.72 (cM) Automated name-based View Maps
9k_snp49 SNP 7.75 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp49 SNP 2.06 (cM) Automated name-based View Maps
9k_snp6814 SNP 10.02 No other positions
9k_snp6648 SNP 11.09 No other positions
9k_snp5627 SNP 16.97 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5627 SNP 7.50 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG11 9k_snp5627 SNP 8.84 (cM) Automated name-based View Maps
9k_snp8011 SNP 20.68 No other positions
9k_snp3132 SNP 20.68 No other positions
9k_snp3386 SNP 20.68 No other positions
9k_snp7861 SNP 21.36 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp7861 SNP 7.50 (cM) Automated name-based View Maps
9k_snp7746 SNP 22.22 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp7746 SNP 7.50 (cM) Automated name-based View Maps
9k_snp5299 SNP 23.18 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5299 SNP 7.50 (cM) Automated name-based View Maps
9k_snp2850 SNP 28.80 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp2850 SNP 16.95 (cM) Automated name-based View Maps
9k_snp579 SNP 28.80 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp579 SNP 14.46 (cM) Automated name-based View Maps
9k_snp8281 SNP 28.80 No other positions
9k_snp6634 SNP 28.80 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp6634 SNP 14.46 (cM) Automated name-based View Maps
9k_snp5908 SNP 33.73 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5908 SNP 18.28 (cM) Automated name-based View Maps
9k_snp4788 SNP 37.15 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp4788 SNP 23.50 (cM) Automated name-based View Maps
9k_snp5938 SNP 42.54 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5938 SNP 28.40 (cM) Automated name-based View Maps
9k_snp5288 SNP 42.54 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp5288 SNP 28.40 (cM) Automated name-based View Maps
9k_snp3537 SNP 48.96 No other positions
9k_snp576 SNP 49.30 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp576 SNP 33.06 (cM) Automated name-based View Maps
9k_snp7607 SNP 50.43 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG11 9k_snp7607 SNP 33.96 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG11 9k_snp7607 SNP 24.91 (cM) Automated name-based View Maps

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