CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexMaroc_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 202.21 cM
Features by Type:
81 SNP
81 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 81.       of 4 | Next
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp8686 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp8686 SNP 2.17 (cM) Automated name-based View Maps
9k_snp5480 SNP 1.11 No other positions
9k_snp4181 SNP 2.23 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4181 SNP 3.04 (cM) Automated name-based View Maps
9k_snp2016 SNP 9.50 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp2016 SNP 7.66 (cM) Automated name-based View Maps
9k_snp5450 SNP 10.16 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp5450 SNP 9.29 (cM) Automated name-based View Maps
9k_snp63 SNP 10.80 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp63 SNP 7.66 (cM) Automated name-based View Maps
9k_snp4328 SNP 18.52 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4328 SNP 13.52 (cM) Automated name-based View Maps
9k_snp4831 SNP 18.52 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4831 SNP 13.52 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5 9k_snp4831 SNP 0.00 (cM) Automated name-based View Maps
9k_snp8273 SNP 24.10 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp8273 SNP 20.92 (cM) Automated name-based View Maps
9k_snp4802 SNP 27.37 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4802 SNP 29.60 (cM) Automated name-based View Maps
9k_snp4253 SNP 27.37 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4253 SNP 29.60 (cM) Automated name-based View Maps
9k_snp8613 SNP 27.37 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp8613 SNP 29.60 (cM) Automated name-based View Maps
9k_snp2573 SNP 28.44 No other positions
9k_snp6072 SNP 41.65 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp6072 SNP 35.44 (cM) Automated name-based View Maps
9k_snp3814 SNP 50.00 No other positions
9k_snp4944 SNP 50.94 No other positions
9k_snp628 SNP 52.91 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp628 SNP 39.27 (cM) Automated name-based View Maps
9k_snp7548 SNP 52.91 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5 9k_snp7548 SNP 23.22 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp7548 SNP 43.35 (cM) Automated name-based View Maps
9k_snp5795 SNP 52.91 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5 9k_snp5795 SNP 33.72 (cM) Automated name-based View Maps
9k_snp5366 SNP 55.98 No other positions
9k_snp4647 SNP 65.04 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4647 SNP 47.78 (cM) Automated name-based View Maps
9k_snp127 SNP 68.21 No other positions
9k_snp3885 SNP 68.21 No other positions
9k_snp135 SNP 72.06 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp135 SNP 49.59 (cM) Automated name-based View Maps
9k_snp499 SNP 78.95 No other positions

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