CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexMaroc_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 158.70 cM
Features by Type:
45 SNP
45 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 45.       of 2 | Next
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp7739 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp7739 SNP 102.12 (cM) Automated name-based View Maps
9k_snp2506 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp2506 SNP 101.38 (cM) Automated name-based View Maps
9k_snp3426 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp3426 SNP 97.98 (cM) Automated name-based View Maps
9k_snp2362 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp2362 SNP 97.98 (cM) Automated name-based View Maps
9k_snp6469 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp6469 SNP 97.98 (cM) Automated name-based View Maps
9k_snp333 SNP 12.05 No other positions
9k_snp5582 SNP 13.31 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp5582 SNP 0.00 (cM) Automated name-based View Maps
9k_snp5350 SNP 13.31 No other positions
9k_snp3774 SNP 14.02 No other positions
9k_snp3180 SNP 14.16 No other positions
9k_snp8932 SNP 14.97 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp8932 SNP 90.09 (cM) Automated name-based View Maps
9k_snp2053 SNP 22.04 No other positions
9k_snp4180 SNP 50.06 No other positions
9k_snp4282 SNP 58.73 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp4282 SNP 0.00 (cM) Automated name-based View Maps
9k_snp4215 SNP 58.73 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp4215 SNP 0.00 (cM) Automated name-based View Maps
9k_snp8776 SNP 58.73 No other positions
9k_snp2712 SNP 58.73 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp2712 SNP 3.37 (cM) Automated name-based View Maps
9k_snp7215 SNP 58.73 No other positions
9k_snp3039 SNP 59.79 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp3039 SNP 0.00 (cM) Automated name-based View Maps
9k_snp1643 SNP 62.93 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp1643 SNP 3.37 (cM) Automated name-based View Maps
9k_snp5141 SNP 65.02 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp5141 SNP 0.00 (cM) Automated name-based View Maps
9k_snp2612 SNP 69.43 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp2612 SNP 4.30 (cM) Automated name-based View Maps
9k_snp2349 SNP 70.33 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp2349 SNP 34.54 (cM) Automated name-based View Maps
9k_snp3313 SNP 82.82 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp3313 SNP 5.88 (cM) Automated name-based View Maps
9k_snp5340 SNP 87.42 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8 9k_snp5340 SNP 6.78 (cM) Automated name-based View Maps

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