CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 125.82 cM
Features by Type:
64 SNP
64 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 64.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp6863 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp6863 SNP 4.31 (cM) Automated name-based View Maps
9k_snp2401 SNP 0.86 No other positions
9k_snp5846 SNP 3.39 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp5846 SNP 0.00 (cM) Automated name-based View Maps
9k_snp3269 SNP 5.23 No other positions
9k_snp1803 SNP 6.19 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp1803 SNP 7.52 (cM) Automated name-based View Maps
9k_snp809 SNP 12.98 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp809 SNP 16.81 (cM) Automated name-based View Maps
9k_snp8038 SNP 12.98 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp8038 SNP 15.89 (cM) Automated name-based View Maps
9k_snp205 SNP 13.96 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp205 SNP 18.47 (cM) Automated name-based View Maps
9k_snp8352 SNP 13.96 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp8352 SNP 18.47 (cM) Automated name-based View Maps
9k_snp8762 SNP 17.59 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp8762 SNP 13.19 (cM) Automated name-based View Maps
9k_snp217 SNP 17.62 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG12 9k_snp217 SNP 18.10 (cM) Automated name-based View Maps
9k_snp257 SNP 18.36 No other positions
9k_snp6726 SNP 23.05 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG12 9k_snp6726 SNP 23.51 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG12 9k_snp6726 SNP 21.89 (cM) Automated name-based View Maps
9k_snp8424 SNP 27.13 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp8424 SNP 32.49 (cM) Automated name-based View Maps
9k_snp7039 SNP 32.64 No other positions
9k_snp5750 SNP 38.62 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp5750 SNP 45.46 (cM) Automated name-based View Maps
9k_snp6170 SNP 51.46 No other positions
9k_snp2194 SNP 52.65 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG12 9k_snp2194 SNP 60.67 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG12 9k_snp2194 SNP 57.21 (cM) Automated name-based View Maps
9k_snp2032 SNP 53.50 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp2032 SNP 61.08 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG12 9k_snp2032 SNP 62.69 (cM) Automated name-based View Maps
9k_snp4104 SNP 59.01 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp4104 SNP 97.44 (cM) Automated name-based View Maps
9k_snp6625 SNP 59.13 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp6625 SNP 95.10 (cM) Automated name-based View Maps
9k_snp1350 SNP 59.13 No other positions
9k_snp4854 SNP 59.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp4854 SNP 79.26 (cM) Automated name-based View Maps
9k_snp3513 SNP 59.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp3513 SNP 80.32 (cM) Automated name-based View Maps
9k_snp8284 SNP 59.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG12 9k_snp8284 SNP 81.04 (cM) Automated name-based View Maps

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