CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG2
Map Start: 0.00 cM
Map Stop: 119.60 cM
Features by Type:
54 SNP
54 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 54.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG2
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp4310 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp4310 SNP 0.00 (cM) Automated name-based View Maps
9k_snp8208 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp8208 SNP 0.00 (cM) Automated name-based View Maps
9k_snp7792 SNP 1.35 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG2 9k_snp7792 SNP 0.00 (cM) Automated name-based View Maps
9k_snp2115 SNP 8.43 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp2115 SNP 19.08 (cM) Automated name-based View Maps
9k_snp2484 SNP 10.46 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp2484 SNP 24.36 (cM) Automated name-based View Maps
9k_snp880 SNP 13.58 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp880 SNP 27.56 (cM) Automated name-based View Maps
9k_snp124 SNP 15.77 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp124 SNP 32.73 (cM) Automated name-based View Maps
9k_snp4478 SNP 17.54 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp4478 SNP 38.09 (cM) Automated name-based View Maps
9k_snp8622 SNP 19.12 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp8622 SNP 55.21 (cM) Automated name-based View Maps
9k_snp62 SNP 19.19 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG2 9k_snp62 SNP 32.80 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp62 SNP 55.24 (cM) Automated name-based View Maps
9k_snp5404 SNP 19.88 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG2 9k_snp5404 SNP 34.50 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp5404 SNP 56.30 (cM) Automated name-based View Maps
9k_snp3887 SNP 20.58 No other positions
9k_snp8271 SNP 22.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp8271 SNP 49.62 (cM) Automated name-based View Maps
9k_snp7485 SNP 22.65 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG2 9k_snp7485 SNP 19.09 (cM) Automated name-based View Maps
9k_snp8541 SNP 22.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp8541 SNP 47.80 (cM) Automated name-based View Maps
9k_snp3003 SNP 25.50 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp3003 SNP 59.42 (cM) Automated name-based View Maps
9k_snp2046 SNP 25.56 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp2046 SNP 58.65 (cM) Automated name-based View Maps
9k_snp2729 SNP 30.17 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp2729 SNP 69.09 (cM) Automated name-based View Maps
9k_snp6832 SNP 30.17 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp6832 SNP 69.84 (cM) Automated name-based View Maps
9k_snp4091 SNP 32.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp4091 SNP 69.09 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG2 9k_snp4091 SNP 44.67 (cM) Automated name-based View Maps
9k_snp4166 SNP 32.08 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp4166 SNP 69.09 (cM) Automated name-based View Maps
9k_snp1726 SNP 32.08 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp1726 SNP 69.09 (cM) Automated name-based View Maps
9k_snp4119 SNP 32.30 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG2 9k_snp4119 SNP 47.16 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp4119 SNP 69.09 (cM) Automated name-based View Maps
9k_snp8037 SNP 37.70 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG2 9k_snp8037 SNP 82.70 (cM) Automated name-based View Maps
9k_snp8732 SNP 37.70 No other positions

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