CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 115.02 cM
Features by Type:
68 SNP
68 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 68.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp3260 SNP 0.00 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG3 9k_snp3260 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp3260 SNP 0.00 (cM) Automated name-based View Maps
9k_snp5200 SNP 3.25 No other positions
9k_snp1171 SNP 5.99 No other positions
9k_snp482 SNP 11.95 No other positions
9k_snp8103 SNP 16.63 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp8103 SNP 9.23 (cM) Automated name-based View Maps
9k_snp646 SNP 16.63 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp646 SNP 9.23 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG3 9k_snp646 SNP 12.51 (cM) Automated name-based View Maps
9k_snp4785 SNP 16.63 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp4785 SNP 9.23 (cM) Automated name-based View Maps
9k_snp7444 SNP 22.12 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp7444 SNP 11.14 (cM) Automated name-based View Maps
9k_snp6328 SNP 26.45 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp6328 SNP 18.67 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG3 9k_snp6328 SNP 21.58 (cM) Automated name-based View Maps
9k_snp8750 SNP 27.34 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp8750 SNP 22.46 (cM) Automated name-based View Maps
9k_snp2099 SNP 28.12 No other positions
9k_snp3247 SNP 28.26 No other positions
9k_snp2793 SNP 30.86 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp2793 SNP 27.48 (cM) Automated name-based View Maps
9k_snp4878 SNP 33.66 No other positions
9k_snp1649 SNP 33.66 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp1649 SNP 28.46 (cM) Automated name-based View Maps
9k_snp6865 SNP 41.26 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG3 9k_snp6865 SNP 38.29 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp6865 SNP 36.42 (cM) Automated name-based View Maps
9k_snp5448 SNP 41.34 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp5448 SNP 34.48 (cM) Automated name-based View Maps
9k_snp3838 SNP 50.49 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp3838 SNP 47.66 (cM) Automated name-based View Maps
9k_snp1979 SNP 57.73 No other positions
9k_snp517 SNP 58.51 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp517 SNP 55.27 (cM) Automated name-based View Maps
9k_snp1404 SNP 59.38 No other positions
9k_snp3811 SNP 61.42 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp3811 SNP 58.43 (cM) Automated name-based View Maps
9k_snp8269 SNP 62.81 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp8269 SNP 59.52 (cM) Automated name-based View Maps
9k_snp6468 SNP 66.41 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp6468 SNP 66.89 (cM) Automated name-based View Maps
9k_snp6658 SNP 66.52 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG3 9k_snp6658 SNP 66.89 (cM) Automated name-based View Maps

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