CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG4
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG4
Map Start: 0.00 cM
Map Stop: 126.27 cM
Features by Type:
37 SNP
37 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 37.       of 2 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp4085 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp4085 SNP 2.22 (cM) Automated name-based View Maps
9k_snp6712 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp6712 SNP 2.22 (cM) Automated name-based View Maps
9k_snp3666 SNP 2.10 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp3666 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp3666 SNP 11.37 (cM) Automated name-based View Maps
9k_snp3571 SNP 4.77 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp3571 SNP 20.23 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp3571 SNP 2.28 (cM) Automated name-based View Maps
9k_snp7542 SNP 12.60 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp7542 SNP 7.73 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp7542 SNP 23.43 (cM) Automated name-based View Maps
9k_snp4918 SNP 12.60 No other positions
9k_snp1370 SNP 12.60 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp1370 SNP 23.43 (cM) Automated name-based View Maps
9k_snp5857 SNP 12.60 No other positions
9k_snp7285 SNP 21.04 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp7285 SNP 32.67 (cM) Automated name-based View Maps
9k_snp4045 SNP 21.04 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp4045 SNP 32.67 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp4045 SNP 19.22 (cM) Automated name-based View Maps
9k_snp5252 SNP 30.27 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp5252 SNP 43.32 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp5252 SNP 26.57 (cM) Automated name-based View Maps
9k_snp7115 SNP 32.87 Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG4 9k_snp7115 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp7115 SNP 51.32 (cM) Automated name-based View Maps
9k_snp2310 SNP 46.77 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp2310 SNP 67.61 (cM) Automated name-based View Maps
9k_snp536 SNP 49.19 No other positions
9k_snp7382 SNP 50.35 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp7382 SNP 74.79 (cM) Automated name-based View Maps
9k_snp2323 SNP 57.16 No other positions
9k_snp1148 SNP 57.16 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp1148 SNP 79.76 (cM) Automated name-based View Maps
9k_snp7988 SNP 57.16 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp7988 SNP 80.43 (cM) Automated name-based View Maps
9k_snp5899 SNP 57.16 No other positions
9k_snp3015 SNP 57.16 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp3015 SNP 79.76 (cM) Automated name-based View Maps
9k_snp1321 SNP 64.15 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp1321 SNP 99.40 (cM) Automated name-based View Maps
9k_snp83 SNP 67.28 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp83 SNP 61.92 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp83 SNP 106.61 (cM) Automated name-based View Maps
9k_snp1159 SNP 67.28 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp1159 SNP 106.61 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG4 9k_snp1159 SNP 59.97 (cM) Automated name-based View Maps
9k_snp1555 SNP 67.73 No other positions
9k_snp8560 SNP 67.86 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG4 9k_snp8560 SNP 106.61 (cM) Automated name-based View Maps

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