CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 139.98 cM
Features by Type:
54 SNP
54 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 54.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp5479 SNP 0.00 No other positions
9k_snp2953 SNP 0.99 No other positions
9k_snp8686 SNP 2.17 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp8686 SNP 0.00 (cM) Automated name-based View Maps
9k_snp4181 SNP 3.04 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4181 SNP 2.23 (cM) Automated name-based View Maps
9k_snp2016 SNP 7.66 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp2016 SNP 9.50 (cM) Automated name-based View Maps
9k_snp63 SNP 7.66 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp63 SNP 10.80 (cM) Automated name-based View Maps
9k_snp5450 SNP 9.29 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp5450 SNP 10.16 (cM) Automated name-based View Maps
9k_snp4831 SNP 13.52 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5 9k_snp4831 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4831 SNP 18.52 (cM) Automated name-based View Maps
9k_snp4328 SNP 13.52 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4328 SNP 18.52 (cM) Automated name-based View Maps
9k_snp7017 SNP 14.39 No other positions
9k_snp8273 SNP 20.92 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp8273 SNP 24.10 (cM) Automated name-based View Maps
9k_snp4253 SNP 29.60 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4253 SNP 27.37 (cM) Automated name-based View Maps
9k_snp4802 SNP 29.60 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4802 SNP 27.37 (cM) Automated name-based View Maps
9k_snp8613 SNP 29.60 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp8613 SNP 27.37 (cM) Automated name-based View Maps
9k_snp6072 SNP 35.44 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp6072 SNP 41.65 (cM) Automated name-based View Maps
9k_snp628 SNP 39.27 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp628 SNP 52.91 (cM) Automated name-based View Maps
9k_snp5797 SNP 43.35 No other positions
9k_snp7548 SNP 43.35 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp7548 SNP 52.91 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5 9k_snp7548 SNP 23.22 (cM) Automated name-based View Maps
9k_snp4647 SNP 47.78 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4647 SNP 65.04 (cM) Automated name-based View Maps
9k_snp135 SNP 49.59 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp135 SNP 72.06 (cM) Automated name-based View Maps
9k_snp1274 SNP 56.93 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp1274 SNP 85.29 (cM) Automated name-based View Maps
9k_snp4060 SNP 59.58 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4060 SNP 85.29 (cM) Automated name-based View Maps
9k_snp6948 SNP 59.58 No other positions
9k_snp5887 SNP 59.58 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp5887 SNP 87.45 (cM) Automated name-based View Maps
9k_snp7187 SNP 60.53 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5 9k_snp7187 SNP 48.30 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp7187 SNP 88.44 (cM) Automated name-based View Maps

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