CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG8
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG8
Map Start: 0.00 cM
Map Stop: 102.44 cM
Features by Type:
38 SNP
38 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 38.       of 2 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG8
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp5141 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp5141 SNP 65.02 (cM) Automated name-based View Maps
9k_snp4282 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp4282 SNP 58.73 (cM) Automated name-based View Maps
9k_snp4215 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp4215 SNP 58.73 (cM) Automated name-based View Maps
9k_snp3039 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp3039 SNP 59.79 (cM) Automated name-based View Maps
9k_snp4179 SNP 1.54 Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG8b 9k_snp4179 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp4179 SNP 31.40 (cM) Automated name-based View Maps
9k_snp2712 SNP 3.37 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp2712 SNP 58.73 (cM) Automated name-based View Maps
9k_snp1643 SNP 3.37 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp1643 SNP 62.93 (cM) Automated name-based View Maps
9k_snp2612 SNP 4.30 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp2612 SNP 69.43 (cM) Automated name-based View Maps
9k_snp3313 SNP 5.88 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp3313 SNP 82.82 (cM) Automated name-based View Maps
9k_snp5340 SNP 6.78 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp5340 SNP 87.42 (cM) Automated name-based View Maps
9k_snp110 SNP 9.04 No other positions
9k_snp5343 SNP 9.04 No other positions
9k_snp6630 SNP 17.17 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp6630 SNP 100.25 (cM) Automated name-based View Maps
9k_snp1134 SNP 17.17 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp1134 SNP 46.25 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp1134 SNP 100.25 (cM) Automated name-based View Maps
9k_snp3066 SNP 20.10 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp3066 SNP 104.19 (cM) Automated name-based View Maps
9k_snp8160 SNP 20.10 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp8160 SNP 104.19 (cM) Automated name-based View Maps
9k_snp5800 SNP 25.77 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp5800 SNP 53.75 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp5800 SNP 108.59 (cM) Automated name-based View Maps
9k_snp3547 SNP 32.26 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp3547 SNP 115.82 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp3547 SNP 60.43 (cM) Automated name-based View Maps
9k_snp2 SNP 41.35 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp2 SNP 125.99 (cM) Automated name-based View Maps
9k_snp4720 SNP 46.72 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp4720 SNP 126.97 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG8 9k_snp4720 SNP 74.04 (cM) Automated name-based View Maps
9k_snp6990 SNP 51.87 No other positions
9k_snp7911 SNP 65.79 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp7911 SNP 151.55 (cM) Automated name-based View Maps
9k_snp4991 SNP 75.19 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp4991 SNP 158.70 (cM) Automated name-based View Maps
9k_snp1829 SNP 75.19 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp1829 SNP 158.70 (cM) Automated name-based View Maps
9k_snp8188 SNP 78.86 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG8 9k_snp8188 SNP 158.70 (cM) Automated name-based View Maps

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