CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_INRA2012  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_INRA_2012 [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 148.28 cM
Features by Type:
5 EST
227 SNP
4 eSSR
12 SAMPL
248 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 248.       of 10 | Next
Pinus pinaster - INIA_INRA_2012 - LG5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CT582615 SNP 0.00 Pinus pinaster - INIA_composite_2012 - LG5 CT582615 SNP 0.00 (cM) Automated name-based View Maps
FN256783 SNP 2.51 Pinus pinaster - INRA_composite_2012 - LG5 FN256783 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 FN256783 SNP 0.00 (cM) Automated name-based View Maps
F51TW9001BR2I6 SNP 3.28 Pinus pinaster - F2_H12_2012 - LG5 F51TW9001BR2I6 SNP 0.77 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F F51TW9001BR2I6 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001BR2I6 SNP 0.77 (cM) Automated name-based View Maps
BX255673 SNP 3.28 Pinus pinaster - INRA_composite_2012 - LG5 BX255673 SNP 0.77 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX255673 SNP 0.77 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX255673 SNP 2.65 (cM) Automated name-based View Maps
F51TW9001B01XU SNP 3.28 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001B01XU SNP 2.65 (cM) Automated name-based View Maps
AL749600 SNP 4.11 Pinus pinaster - INIA_composite_2012 - LG5 AL749600 SNP 17.78 (cM) Automated name-based View Maps
m19 SNP 4.15 Pinus pinaster - INRA_composite_2012 - LG5 m19 SNP 1.64 (cM) Automated name-based View Maps
Pinus pinaster - G2_G2F_2012 - LG5F m19 SNP 1.25 (cM) Automated name-based View Maps
CT576001 SNP 4.43 Pinus pinaster - INIA_composite_2012 - LG5 CT576001 SNP 18.10 (cM) Automated name-based View Maps
BX253242 SNP 5.68 Pinus pinaster - G2_G2M_2012 - LG5M BX253242 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX253242 SNP 3.17 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX253242 SNP 2.37 (cM) Automated name-based View Maps
CT578845 SNP 5.68 Pinus pinaster - INRA_composite_2012 - LG5 CT578845 SNP 3.17 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 CT578845 SNP 3.17 (cM) Automated name-based View Maps
CT580278 SNP 5.77 Pinus pinaster - INRA_composite_2012 - LG5 CT580278 SNP 3.26 (cM) Automated name-based View Maps
CT574918 SNP 5.77 Pinus pinaster - INRA_composite_2012 - LG5 CT574918 SNP 3.26 (cM) Automated name-based View Maps
i09714s2101 SNP 5.99 Pinus pinaster - INIA_composite_2012 - LG5 i09714s2101 SNP 5.36 (cM) Automated name-based View Maps
m993 SNP 6.53 Pinus pinaster - INRA_composite_2012 - LG5 m993 SNP 4.02 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 m993 SNP 4.62 (cM) Automated name-based View Maps
m994 SNP 7.75 Pinus pinaster - INRA_composite_2012 - LG5 m994 SNP 5.24 (cM) Automated name-based View Maps
i13707s966pg SNP 13.67 Pinus pinaster - INIA_composite_2012 - LG5 i13707s966pg SNP 13.04 (cM) Automated name-based View Maps
i12191s967 SNP 13.92 Pinus pinaster - INIA_composite_2012 - LG5 i12191s967 SNP 13.29 (cM) Automated name-based View Maps
BX253183 SNP 15.76 Pinus pinaster - G2_G2M_2012 - LG5M BX253183 SNP 0.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 BX253183 SNP 13.25 (cM) Automated name-based View Maps
BX251492 SNP 19.37 Pinus pinaster - INRA_composite_2012 - LG5 BX251492 SNP 13.75 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 BX251492 SNP 25.40 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 BX251492 SNP 14.35 (cM) Automated name-based View Maps
CT578526 SNP 19.37 Pinus pinaster - G2_G2F_2012 - LG5F CT578526 SNP 11.40 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 CT578526 SNP 13.75 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 CT578526 SNP 14.35 (cM) Automated name-based View Maps
Pinus pinaster - INIA_composite_2012 - LG5 CT578526 SNP 29.93 (cM) Automated name-based View Maps
F51TW9001B7T52 SNP 19.37 Pinus pinaster - G2_G2F_2012 - LG5F F51TW9001B7T52 SNP 16.33 (cM) Automated name-based View Maps
Pinus pinaster - F2_H12_2012 - LG5 F51TW9001B7T52 SNP 17.46 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 F51TW9001B7T52 SNP 16.86 (cM) Automated name-based View Maps
m349 SNP 19.37 Pinus pinaster - F2_H12_2012 - LG5 m349 SNP 18.00 (cM) Automated name-based View Maps
Pinus pinaster - INRA_composite_2012 - LG5 m349 SNP 16.86 (cM) Automated name-based View Maps
AL749758 SNP 19.37 Pinus pinaster - INIA_composite_2012 - LG5 AL749758 SNP 20.39 (cM) Automated name-based View Maps
i16562s581pg SNP 19.37 Pinus pinaster - INIA_composite_2012 - LG5 i16562s581pg SNP 20.60 (cM) Automated name-based View Maps
F51TW9001C8ABL SNP 20.55 Pinus pinaster - INIA_composite_2012 - LG5 F51TW9001C8ABL SNP 29.69 (cM) Automated name-based View Maps

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