CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_08
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_08
Map Start: 0.00 cM
Map Stop: 170.90 cM
Features by Type:
6 EST
164 SNP
11 RFLP
181 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 181.       of 8 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_08
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rflpPitaIFG_2574_1 RFLP 18.20 No other positions
rflpPitaIFG_2574_2 RFLP 18.20 No other positions
rflpPitaIFG_138_A RFLP 26.00 No other positions
rflpPitaIFG_2978_1 RFLP 27.90 No other positions
rflpPitaIFG_2899_7 RFLP 28.00 No other positions
rflpPitaIFG_2220_A RFLP 38.40 No other positions
estPitaIFG_22C8_a EST 39.90 No other positions
rflpPitaIFG_1454_A RFLP 39.90 No other positions
estPitaIFG_AGP6_3p_a EST 158.00 No other positions
estPitaIFG_9008_a EST 56.60 No other positions
rflpPitaIFG_2782_2 RFLP 57.50 No other positions
rflpPitaIFG_2022_A RFLP 88.60 No other positions
estPitaIFG_0893_a EST 92.10 No other positions
estPitaIFG_8596_a EST 92.10 No other positions
estPitaIFG_8837_a EST 92.10 No other positions
rflpPitaIFG_2540_2 RFLP 92.10 No other positions
rflpPitaIFG_2295_2 RFLP 13.20 No other positions
snp0_11407_01-64 SNP 100.50 No other positions
snp0_11531_01-379 SNP 158.80 No other positions
snp0_12167_01-401 SNP 116.90 No other positions
snp0_12265_02-266 SNP 95.50 No other positions
snp0_13022_01-389 SNP 1.20 No other positions
snp0_13676_02-511 SNP 82.20 No other positions
snp0_13707_02-73 SNP 158.00 No other positions
snp0_13765_01-65 SNP 99.90 No other positions

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