CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_09
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_09
Map Start: 0.00 cM
Map Stop: 168.20 cM
Features by Type:
7 EST
119 SNP
19 RFLP
145 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 145.       of 6 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_09
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rflpPitaIFG_2006_A RFLP 33.90 No other positions
estPitaIFG_20G2_a EST 38.90 No other positions
estPitaIFG_9053_a EST 38.90 No other positions
rflpPitaIFG_1D9_1 RFLP 38.90 No other positions
rflpPitaIFG_2882_1 RFLP 150.20 No other positions
rflpPitaIFG_2897_A RFLP 150.20 No other positions
rflpPitaIFG_2931_A RFLP 150.20 No other positions
rflpPitaIFG_2393_1 RFLP 150.80 No other positions
rflpPitaIFG_2963_2 RFLP 150.80 No other positions
rflpPitaIFG_1636_6 RFLP 155.20 No other positions
estPitaIFG_8537_a EST 63.30 No other positions
estPitaIFG_1576_a EST 70.50 No other positions
estPitaIFG_2253_a EST 70.50 No other positions
rflpPitaIFG_1576_1 RFLP 70.50 No other positions
rflpPitaIFG_2253_A RFLP 70.50 No other positions
rflpPitaIFG_3008_2 RFLP 70.50 No other positions
estPitaIFG_9102_a EST 108.30 No other positions
rflpPitaIFG_701_1 RFLP 109.10 No other positions
rflpPitaIFG_658_A RFLP 123.80 No other positions
rflpPitaIFG_2899_4 RFLP 6.70 No other positions
rflpPitaIFG_2530_2 RFLP 7.70 No other positions
estPitaIFG_2053_b EST 130.50 No other positions
rflpPitaIFG_2441_1 RFLP 136.20 No other positions
rflpPitaIFG_1916_3 RFLP 15.00 No other positions
rflpPitaIFG_975_2 RFLP 140.70 No other positions

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