CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_10
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_10
Map Start: 0.00 cM
Map Stop: 140.40 cM
Features by Type:
6 EST
144 SNP
9 RFLP
159 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 159.       of 7 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
estPitaIFG_0500_a EST 81.30 No other positions
estPitaIFG_9156_a EST 4.90 No other positions
rflpPitaIFG_2479_1 RFLP 6.30 No other positions
estPitaIFG_1956_a EST 11.80 No other positions
rflpPitaIFG_2323_A RFLP 22.00 No other positions
estPitaIFG_8415_a EST 117.60 No other positions
rflpPitaIFG_2994_2 RFLP 28.70 No other positions
rflpPitaIFG_669_4 RFLP 32.70 No other positions
rflpPitaIFG_2899_A RFLP 122.20 No other positions
rflpPitaIFG_669_A RFLP 32.70 No other positions
estPitaIFG_8725_a EST 135.10 No other positions
rflpPitaIFG_2370_1 RFLP 135.10 No other positions
estPitaIFG_2290_a EST 71.70 No other positions
rflpPitaIFG_125_2 RFLP 71.70 No other positions
rflpPitaIFG_459_1 RFLP 71.70 No other positions
snp0_10446_01-240 SNP 76.20 No other positions
snp0_11214_01-408 SNP 43.40 No other positions
snp0_11214_01-88 SNP 44.50 No other positions
snp0_11344_02-107 SNP 15.90 No other positions
snp0_11865_01-66 SNP 9.30 No other positions
snp0_12149_01-86 SNP 113.70 No other positions
snp0_13620_01-163 SNP 137.10 No other positions
snp0_13755_03-52 SNP 39.50 No other positions
snp0_14069_01-49 SNP 11.80 No other positions
snp0_1443_01-80 SNP 40.10 No other positions

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