CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_11
Map Start: 0.00 cM
Map Stop: 174.70 cM
Features by Type:
2 EST
129 SNP
13 RFLP
144 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 144.       of 6 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rflpPitaIFG_2538_B RFLP 154.50 No other positions
estPitaIFG_8569_a EST 156.60 No other positions
rflpPitaIFG_2150_A RFLP 161.50 No other positions
rflpPitaIFG_2885_1 RFLP 161.50 No other positions
rflpPitaIFG_2885_B RFLP 161.50 No other positions
rflpPitaIFG_2994_5 RFLP 164.40 No other positions
rflpPitaIFG_2986_A RFLP 59.70 No other positions
rflpPitaIFG_66_1 RFLP 74.60 No other positions
rflpPitaIFG_1623_A RFLP 77.90 No other positions
estPitaIFG_8939_a EST 93.00 No other positions
rflpPitaIFG_3006_1 RFLP 93.00 No other positions
rflpPitaIFG_48_1 RFLP 103.20 No other positions
rflpPitaIFG_2536_1 RFLP 127.80 No other positions
rflpPitaIFG_2564_A RFLP 127.80 No other positions
rflpPitaIFG_1A7_A RFLP 134.80 No other positions
snp0_10899_03-173 SNP 79.80 No other positions
snp0_11199_01-376 SNP 170.20 No other positions
snp0_12494_03-189 SNP 137.40 No other positions
snp0_12681_01-532 SNP 7.40 No other positions
snp0_13185_01-129 SNP 23.50 No other positions
snp0_13929_02-186 SNP 164.40 No other positions
snp0_14991_01-174 SNP 174.70 No other positions
snp0_15010_01-259 SNP 87.20 No other positions
snp0_1576_01-407 SNP 51.60 No other positions
snp0_16524_02-57 SNP 166.80 No other positions

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