CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



Save link

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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C14_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C14_2014 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 125.87 cM
Features by Type:
62 SNP
7 SAMPL
69 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 69.       of 3 | Next
Pinus pinaster - INIA_C14_2014 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AL750545-695 SNP 60.00 No other positions
BX252921-420 SNP 60.08 No other positions
BX252921-560 SNP 60.11 No other positions
FN694912-756 SNP 60.74 No other positions
BX251715-344 SNP 0.00 No other positions
F51TW9001AGXXI-183 SNP 0.34 No other positions
BX681419-1231 SNP 1.41 No other positions
CT574987-1033 SNP 1.41 No other positions
BX681076-568 SNP 2.32 No other positions
AL750578-1296 SNP 2.79 No other positions
AL750578-636 SNP 2.83 No other positions
AL749621-2679 SNP 3.03 No other positions
F51TW9001CH564-1897 SNP 3.78 No other positions
BX251132-579 SNP 4.22 No other positions
F51TW9002GCBWI-444 SNP 4.22 No other positions
F51TW9001CH564-1743 SNP 4.38 No other positions
AL750476-207 SNP 5.49 No other positions
AL750476-119 SNP 5.55 No other positions
i14924s426 SNP 8.16 No other positions
i14025s781pg SNP 18.88 No other positions
BX250498-303 SNP 19.33 No other positions
BX249790-116 SNP 23.63 No other positions
i12424s634 SNP 26.42 No other positions
AL751055-727 SNP 26.92 No other positions
F51TW9001A16Q8-89 SNP 27.13 No other positions

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