CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C14_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C14_2014 [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 128.12 cM
Features by Type:
1 EST
85 SNP
1 eSSR
15 SAMPL
102 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 102.       of 5 | Next
Pinus pinaster - INIA_C14_2014 - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
m654 SNP 122.07 No other positions
m653 SNP 122.11 No other positions
C-CATA/E39_81 SAMPL 13.26 No other positions
BX254824-1674 SNP 14.25 No other positions
BX680667-1295 SNP 120.62 No other positions
AL750773-681 SNP 0.00 No other positions
BX250949-425 SNP 0.00 No other positions
BX254729-352 SNP 0.06 No other positions
i13455s858 SNP 0.40 No other positions
i13455s498 SNP 1.48 No other positions
FN695317-316 SNP 4.29 No other positions
F51TW9001B2JOC-609 SNP 6.61 No other positions
F51TW9001AUALQ-476 SNP 14.34 No other positions
F51TW9001AUALQ-417 SNP 14.90 No other positions
C-GATA/E37_288 SAMPL 20.94 No other positions
m157 SNP 25.41 No other positions
m640 SNP 25.82 No other positions
i11935s1259pg SNP 26.32 No other positions
PtTX3116 eSSR 26.59 Pinus pinaster - INIA_C15_2014 - LG3a PtTX3116 eSSR 84.75 (cM) Automated name-based View Maps
384_CesA3-172 SNP 26.92 No other positions
BX250350-566 SNP 26.92 No other positions
AL749953-103 SNP 27.54 No other positions
BX678445-450 SNP 27.81 No other positions
CT575881-1435 SNP 29.75 No other positions
C-CATA/E41_448 SAMPL 29.98 No other positions

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