CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C14_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5a
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
EST
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C14_2014 [ View Map Set Info ]
Map Name: LG5a
Map Start: 0.00 cM
Map Stop: 79.28 cM
Features by Type:
2 EST
42 SNP
2 eSSR
5 SAMPL
51 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 51.       of 3 | Next
Pinus pinaster - INIA_C14_2014 - LG5a
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
AL749600-462 SNP 0.00 No other positions
CT576001-485 SNP 0.32 No other positions
CT578526-962 SNP 12.15 No other positions
F51TW9001A3ECR-162 SNP 15.31 No other positions
m523 SNP 17.64 No other positions
i15354s325pg SNP 19.19 No other positions
m659 SNP 19.32 No other positions
G-CATA/E32-319 SAMPL 21.48 No other positions
F51TW9001C8ABL-380 SNP 22.33 No other positions
C-CATA/E34_170 SAMPL 22.67 No other positions
F51TW9001B7T52-338 SNP 23.09 No other positions
AL750173-88 SNP 23.91 No other positions
AL750173-583 SNP 24.00 No other positions
BX252048-638 SNP 25.66 No other positions
BX253830-1254 SNP 28.63 No other positions
m878 SNP 29.99 No other positions
F51TW9001A4DYB-204 SNP 30.57 No other positions
BX680335-1475 SNP 33.54 No other positions
BX249114-1218 SNP 34.92 No other positions
BX249114-274 SNP 35.01 No other positions
BX249551-1069 SNP 35.26 No other positions
CT577832-468 SNP 36.03 No other positions
F51TW9001BV0Q9-848 SNP 36.36 No other positions
F5X2MQL01EQT83-315 SNP 36.48 No other positions
F51TW9001BV0Q9-1010 SNP 36.48 No other positions

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