CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_12
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_12
Map Start: 0.00 cM
Map Stop: 168.00 cM
Features by Type:
3 EST
146 SNP
13 RFLP
162 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 162.       of 7 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_12
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
estPitaIFG_1635_a EST 70.60 No other positions
rflpPitaIFG_1635_2 RFLP 70.60 No other positions
rflpPitaIFG_1635_A RFLP 70.60 No other positions
rflpPitaIFG_1635_C RFLP 70.60 No other positions
rflpPitaIFG_1869_2 RFLP 18.70 No other positions
rflpPitaIFG_1889_1 RFLP 25.60 No other positions
estPitaIFG_8580_a EST 26.60 No other positions
rflpPitaIFG_2020_1 RFLP 144.00 No other positions
estPitaIFG_4CH2_a EST 37.30 No other positions
rflpPitaIFG_2361_1 RFLP 144.00 No other positions
rflpPitaIFG_503_1 RFLP 37.30 No other positions
rflpPitaIFG_3021_1 RFLP 154.80 No other positions
rflpPitaIFG_1A7_6 RFLP 159.70 No other positions
rflpPitaIFG_2361_3 RFLP 159.70 No other positions
rflpPitaIFG_1919_1 RFLP 60.60 No other positions
rflpPitaIFG_2994_3 RFLP 162.10 No other positions
snp0_10113_01-119 SNP 84.00 No other positions
snp0_10401_01-126 SNP 30.30 No other positions
snp0_10950_02-148 SNP 120.10 No other positions
snp0_12163_01-286 SNP 118.80 No other positions
snp0_12396_01-74 SNP 60.70 No other positions
snp0_13058_01-68 SNP 43.80 No other positions
snp0_13098_01-68 SNP 102.30 No other positions
snp0_14039_01-47 SNP 114.40 No other positions
snp0_1441_02-74 SNP 132.40 No other positions

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