CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_01
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_01
Map Start: 0.00 cM
Map Stop: 100.40 cM
Features by Type:
86 SNP
10 RFLP
96 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 96.       of 4 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_01
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rflpPitaIFG_2006_C RFLP 97.80 No other positions
rflpPitaIFG_1918_3 RFLP 0.00 No other positions
rflpPitaIFG_2745_1 RFLP 8.00 No other positions
rflpPitaIFG_2718_3 RFLP 38.00 No other positions
rflpPitaIFG_2588_1 RFLP 55.60 No other positions
rflpPitaIFG_2588_2 RFLP 55.60 No other positions
rflpPitaIFG_138_B RFLP 65.80 No other positions
rflpPitaIFG_975_3 RFLP 81.20 No other positions
rflpPitaIFG_2068_A RFLP 83.90 No other positions
rflpPitaIFG_2145_1 RFLP 86.30 No other positions
snp0_12437_01-222 SNP 42.70 No other positions
snp0_124_01-207 SNP 28.10 No other positions
snp0_13310_01-495 SNP 42.40 No other positions
snp0_14590_02-108 SNP 15.80 No other positions
snp0_14677_01-255 SNP 15.80 No other positions
snp0_14961_01-327 SNP 4.10 No other positions
snp0_14972_01-250 SNP 8.00 No other positions
snp0_15448_02-46 SNP 4.10 No other positions
snp0_16206_01-114 SNP 99.40 No other positions
snp0_16400_01-227 SNP 12.50 No other positions
snp0_17140_01-381 SNP 89.80 No other positions
snp0_18261_01-455 SNP 96.10 No other positions
snp0_18313_02-236 SNP 86.90 No other positions
snp0_1849_01-280 SNP 92.70 No other positions
snp0_18587_01-200 SNP 88.60 No other positions

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