CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C15_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C15_2014 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 113.99 cM
Features by Type:
2 EST
78 SNP
80 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 80.       of 4 | Next
Pinus pinaster - INIA_C15_2014 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN692671-375 SNP 0.00 No other positions
C-GATA/E37_107 SNP 0.44 No other positions
BX254396-1696 SNP 1.50 No other positions
i12020s332 SNP 2.06 No other positions
i12020s1079 SNP 2.08 No other positions
i11075s416pg SNP 2.08 No other positions
i11516s445pg SNP 5.95 No other positions
AL750425-1035 SNP 6.26 No other positions
m329 SNP 6.37 No other positions
BX250975-316 SNP 7.32 No other positions
BX250975-506 SNP 7.32 No other positions
i13968s804pg SNP 7.53 No other positions
BX678669-132 SNP 22.51 No other positions
m206 SNP 23.01 No other positions
m104 SNP 24.43 No other positions
m1232 SNP 24.48 No other positions
m1486 SNP 24.85 No other positions
m1522 SNP 25.67 No other positions
m1028 SNP 25.88 No other positions
AL750782-1124 SNP 27.75 No other positions
BX255021-1558 SNP 27.91 No other positions
BX255021-1553 SNP 28.02 No other positions
i10797s68 SNP 29.35 No other positions
BX255081-338 SNP 32.91 No other positions
BX249429-946 SNP 33.87 No other positions

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