CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C15_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C15_2014 [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 112.11 cM
Features by Type:
53 SNP
1 SAMPL
54 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 54.       of 3 | Next
Pinus pinaster - INIA_C15_2014 - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
F5X2MQL01BYO0K-1290 SNP 0.00 No other positions
F51TW9001AHJDG-170 SNP 0.41 No other positions
BX000576-200 SNP 2.98 No other positions
BX000576-1732 SNP 3.01 No other positions
BX680463-415 SNP 5.96 No other positions
i11233s349pg SNP 6.19 No other positions
C-GATA/E44_419 SNP 8.29 No other positions
FN695545-1347 SNP 9.56 No other positions
F51TW9001A0RML-451 SNP 9.90 No other positions
i11319s847pg SNP 9.94 No other positions
m528 SNP 11.60 No other positions
i10678s914pg SNP 11.95 No other positions
m694 SNP 12.23 No other positions
i10684s1059 SNP 13.55 No other positions
T-CATA/E45_77 SAMPL 26.15 No other positions
m444 SNP 28.79 No other positions
FN695724-920 SNP 39.37 No other positions
m15 SNP 41.28 No other positions
i11498s191pg SNP 41.63 No other positions
i11401s943pg SNP 43.56 No other positions
F51TW9001AFOC6-1117 SNP 44.70 No other positions
F51TW9001AFOC6-943 SNP 44.70 No other positions
CT582889-878 SNP 46.23 No other positions
i13661s343 SNP 46.25 No other positions
i13661s109 SNP 46.27 No other positions

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