CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_C15_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG12
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_C15_2014 [ View Map Set Info ]
Map Name: LG12
Map Start: 0.00 cM
Map Stop: 114.13 cM
Features by Type:
2 EST
71 SNP
73 Total

Map Features

Restrict by Map:
[ Download Map Data ]
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Items 1 to 25 of 73.       of 3 | Next
Pinus pinaster - INIA_C15_2014 - LG12
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
i10999s1318 SNP 100.70 No other positions
BX249598-10 SNP 102.52 No other positions
i13957s288 SNP 102.73 No other positions
EST3C8E78 EST 0.00 Pinus pinaster - INIA_composite_2012 - LG12 EST3C8E78 EST 5.48 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 EST3C8E78 EST 8.37 (cM) Automated name-based View Maps
EST3C8E55 EST 0.60 Pinus pinaster - INIA_composite_2012 - LG12 EST3C8E55 EST 6.08 (cM) Automated name-based View Maps
Pinus pinaster - INIA_INRA2012 - LG12 EST3C8E55 EST 8.97 (cM) Automated name-based View Maps
FN694735-2026 SNP 5.31 No other positions
384_Myb2-111 SNP 6.53 No other positions
m756 SNP 8.03 No other positions
Myb2 SNP 8.27 No other positions
m1203 SNP 8.83 No other positions
FN705321-682 SNP 16.31 No other positions
CT578308-922 SNP 17.08 No other positions
C-CATA/E42_438 SNP 17.15 No other positions
CT582029-1054 SNP 17.39 No other positions
i19144s91pg SNP 17.79 No other positions
i19144s246pg SNP 17.81 No other positions
F51TW9001A5CZZ-1219 SNP 18.44 No other positions
F51TW9001C9D02-130 SNP 27.26 No other positions
BX250457-755 SNP 27.26 No other positions
BX248967-202 SNP 29.13 No other positions
F51TW9001CC9GB-779 SNP 29.13 No other positions
BX250827-1053 SNP 29.13 No other positions
i09773s1097 SNP 30.03 No other positions
CT582236-1070 SNP 30.53 No other positions
F51TW9001CNV83-137 SNP 42.50 No other positions

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