CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



Save link

* Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link.



General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_02
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_02
Map Start: 0.00 cM
Map Stop: 164.80 cM
Features by Type:
2 EST
138 SNP
10 RFLP
150 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 150.       of 6 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_02
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
estPitaIFG_4CL_a EST 97.20 No other positions
rflpPitaIFG_149_1 RFLP 4.60 No other positions
rflpPitaIFG_975_1 RFLP 12.40 No other positions
rflpPitaIFG_2113_2 RFLP 148.20 No other positions
rflpPitaIFG_2361_2 RFLP 61.60 No other positions
rflpPitaIFG_1672_A RFLP 73.30 No other positions
rflpPitaIFG_1636_1 RFLP 73.60 No other positions
rflpPitaIFG_2541_1 RFLP 73.60 No other positions
rflpPitaIFG_2707_A RFLP 73.60 No other positions
rflpPitaIFG_726_1 RFLP 85.30 No other positions
estPitaIFG_9151_a EST 86.90 No other positions
rflpPitaIFG_1916_2 RFLP 86.90 No other positions
snp0_10612_02-301 SNP 133.60 No other positions
snp0_1085_01-179 SNP 45.50 No other positions
snp0_11470_02-430 SNP 48.40 No other positions
snp0_13565_01-427 SNP 53.50 No other positions
snp0_14360_01-181 SNP 15.10 No other positions
snp0_15032_02-116 SNP 153.60 No other positions
snp0_15252_01-241 SNP 57.60 No other positions
snp0_15987_01-142 SNP 118.10 No other positions
snp0_16710_02-265 SNP 108.10 No other positions
snp0_16872_01-283 SNP 9.80 No other positions
snp0_1688_02-266 SNP 125.70 No other positions
snp0_1688_02-561 SNP 124.90 No other positions
snp0_18483_01-147 SNP 158.10 No other positions

CMap Contact

Evoltree    BioGeCo    INRA    logo_ff    logo_gmod