CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_03
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_03
Map Start: 0.00 cM
Map Stop: 161.70 cM
Features by Type:
3 EST
146 SNP
2 RFLP
151 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 151.       of 7 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_03
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
snp1_3327_01-387 SNP 15.00 No other positions
estPitaIFG_3C8E_a EST 144.60 No other positions
rflpPitaIFG_2723_1 RFLP 61.20 No other positions
estPitaIFG_0674_a EST 86.40 No other positions
estPitaIFG_8480_a EST 110.50 No other positions
rflpPitaIFG_3012_2 RFLP 23.20 No other positions
snp0_10240_01-410 SNP 55.90 No other positions
snp0_11443_01-656 SNP 40.70 No other positions
snp0_11661_01-375 SNP 61.20 No other positions
snp0_11754_03-109 SNP 1.70 No other positions
snp0_11784_01-329 SNP 96.90 No other positions
snp0_12678_01-393 SNP 31.10 No other positions
snp0_13140_02-316 SNP 146.80 No other positions
snp0_14140_01-98 SNP 56.40 No other positions
snp0_16663_01-412 SNP 146.80 No other positions
snp0_17056_01-388 SNP 80.70 No other positions
snp0_17483_02-239 SNP 157.80 No other positions
snp0_18098_01-298 SNP 143.60 No other positions
snp0_1811_01-363 SNP 60.10 No other positions
snp0_18399_01-462 SNP 160.60 No other positions
snp0_18399_01-59 SNP 158.70 No other positions
snp0_18590_01-137 SNP 133.20 No other positions
snp0_18686_01-400 SNP 75.20 No other positions
snp0_1919_01-109 SNP 43.30 No other positions
snp0_1979_01-57 SNP 13.80 No other positions

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