CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



Save link

* Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link.



General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_04
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_04
Map Start: 0.00 cM
Map Stop: 131.30 cM
Features by Type:
3 EST
126 SNP
6 RFLP
135 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 135.       of 6 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_04
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rflpPitaIFG_653_3 RFLP 107.30 No other positions
rflpPitaIFG_2615_1 RFLP 18.80 No other positions
rflpPitaIFG_1588_A RFLP 19.90 No other positions
estPitaIFG_6N3C_a EST 24.90 No other positions
rflpPitaIFG_2086_2 RFLP 25.80 No other positions
rflpPitaIFG_2969_1 RFLP 47.70 No other positions
estPitaIFG_8510 EST 47.90 No other positions
estPitaIFG_2615_a EST 48.90 No other positions
rflpPitaIFG_1916_1 RFLP 66.10 No other positions
snp0_11419_01-220 SNP 67.00 No other positions
snp0_1150_01-107 SNP 58.60 No other positions
snp0_11649_03-90 SNP 130.20 No other positions
snp0_13348_01-203 SNP 68.70 No other positions
snp0_13391_01-282 SNP 118.30 No other positions
snp0_1583_01-61 SNP 115.80 No other positions
snp0_16353_01-230 SNP 9.00 No other positions
snp0_16687_02-67 SNP 62.50 No other positions
snp0_1670_02-357 SNP 4.50 No other positions
snp0_17212_01-400 SNP 124.50 No other positions
snp0_17247_02-40 SNP 51.70 No other positions
snp0_17557_01-69 SNP 74.70 No other positions
snp0_17559_01-167 SNP 89.80 No other positions
snp0_184_01-363 SNP 39.10 No other positions
snp0_18685_01-31 SNP 122.50 No other positions
snp0_2040_01-149 SNP 57.50 No other positions

CMap Contact

Evoltree    BioGeCo    INRA    logo_ff    logo_gmod