CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_05
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_05
Map Start: 0.00 cM
Map Stop: 172.80 cM
Features by Type:
6 EST
147 SNP
10 RFLP
163 Total

Map Features

Restrict by Map:
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[ Download Feature Correspondence Data ]
Items 1 to 25 of 163.       of 7 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_05
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
snp0_957_01-54 SNP 89.00 No other positions
estPitaIFG_8702_a EST 37.80 No other positions
estPitaIFG_8647_b EST 138.90 No other positions
rflpPitaIFG_2291_A RFLP 138.90 No other positions
rflpPitaIFG_1902_1 RFLP 45.70 No other positions
estPitaIFG_0739_a EST 51.90 No other positions
rflpPitaIFG_2090_1 RFLP 53.00 No other positions
rflpPitaIFG_1D9_3 RFLP 152.70 No other positions
estPitaIFG_2358_a EST 158.50 No other positions
rflpPitaIFG_2802_3 RFLP 160.70 No other positions
rflpPitaIFG_2874_1 RFLP 75.50 No other positions
rflpPitaIFG_2610_A RFLP 85.10 No other positions
estPitaIFG_1950_a EST 85.10 No other positions
rflpPitaIFG_2009_A RFLP 17.30 No other positions
estPitaIFG_0606_a EST 25.30 No other positions
rflpPitaIFG_606_1 RFLP 25.30 No other positions
rflpPitaIFG_1918_A RFLP 121.70 No other positions
snp1_45_01-109 SNP 31.70 No other positions
snp0_10048_01-60 SNP 98.90 No other positions
snp0_1050_01-409 SNP 61.20 No other positions
snp0_11980_01-543 SNP 98.90 No other positions
snp0_12929_02-440 SNP 78.60 No other positions
snp0_13066_01-114 SNP 61.20 No other positions
snp0_13816_01-36 SNP 172.80 No other positions
snp0_13956_01-223 SNP 61.20 No other positions

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