CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INIA_Oria6_2014  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3a
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
eSSR
SAMPL
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INIA_Oria6_2014 [ View Map Set Info ]
Map Name: LG3a
Map Start: 0.00 cM
Map Stop: 118.58 cM
Features by Type:
74 SNP
1 eSSR
1 SAMPL
76 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 76.       of 4 | Next
Pinus pinaster - INIA_Oria6_2014 - LG3a
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
FN692520-82 SNP 0.00 No other positions
BX255567-1611 SNP 0.50 No other positions
FN694995-2329 SNP 3.42 No other positions
i12286s270 SNP 5.16 No other positions
i12286s933 SNP 5.34 No other positions
i09722s630 SNP 19.00 No other positions
i12796s109 SNP 19.69 No other positions
i12796s1057 SNP 19.69 No other positions
i10753s272pg SNP 19.71 No other positions
i10753s860pg SNP 19.78 No other positions
i11224s541pg SNP 21.42 No other positions
CT576288-194 SNP 27.22 No other positions
BX254824-1674 SNP 31.53 No other positions
E44-CATA_276 SAMPL 35.88 No other positions
BX252454-825 SNP 45.38 No other positions
F51TW9001CCHJH-199 SNP 46.14 No other positions
F51TW9001DAPOI-248 SNP 47.04 No other positions
F51TW9001DAPOI-101 SNP 47.14 No other positions
CT578007-276 SNP 48.20 No other positions
AL749953-699 SNP 49.82 No other positions
i14127s143 SNP 52.08 No other positions
i14127s728 SNP 52.21 No other positions
CT577982-752 SNP 53.30 No other positions
m1201 SNP 62.58 No other positions
i13436s283pg SNP 65.42 No other positions

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