CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus taeda-UCD_2010  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps Pita_UCD_0_06
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
EST
RFLP
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus taeda - UCD_2010 [ View Map Set Info ]
Map Name: Pita_UCD_0_06
Map Start: 0.00 cM
Map Stop: 177.70 cM
Features by Type:
5 EST
150 SNP
18 RFLP
173 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 173.       of 7 | Next
Pinus taeda - UCD_2010 - Pita_UCD_0_06
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
rflpPitaIFG_2090_3 RFLP 73.30 No other positions
rflpPitaIFG_2718_2 RFLP 77.30 No other positions
rflpPitaIFG_2145_3 RFLP 174.70 No other positions
estPitaIFG_6C5A_a EST 93.40 No other positions
rflpPitaIFG_2564_B RFLP 101.50 No other positions
rflpPitaIFG_2802_2 RFLP 107.80 No other positions
rflpPitaIFG_2220_B RFLP 12.50 No other positions
estPitaIFG_8747_a EST 113.40 No other positions
rflpPitaIFG_2530_A RFLP 117.60 No other positions
rflpPitaIFG_2697_2 RFLP 118.70 No other positions
rflpPitaIFG_2994_4 RFLP 118.70 No other positions
estPitaIFG_2N7G_a EST 26.00 No other positions
rflpPitaIFG_1636_2 RFLP 26.00 No other positions
rflpPitaIFG_2994_1 RFLP 26.00 No other positions
estPitaIFG_8738_a EST 30.40 No other positions
rflpPitaIFG_1869_1 RFLP 39.60 No other positions
rflpPitaIFG_2113_1 RFLP 141.90 No other positions
rflpPitaIFG_2274_1 RFLP 51.00 No other positions
estPitaIFG_8429_a EST 53.80 No other positions
rflpPitaIFG_2958_1 RFLP 53.80 No other positions
rflpPitaIFG_975_4 RFLP 163.10 No other positions
rflpPitaIFG_1A2_1 RFLP 69.70 No other positions
rflpPitaIFG_1A2_C RFLP 69.70 No other positions
snp0_11063_02-432 SNP 110.10 No other positions
snp0_11063_02-55 SNP 110.50 No other positions

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