CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INRA_Ppinaster_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
AFLP
Contig
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INRA_Ppinaster_composite_2015 [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 132.70 cM
Features by Type:
281 Contig
10 AFLP
2 EST
9 SNP
302 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 302.       of 13 | Next
Pinus pinaster - INRA_Ppinaster_composite_2015 - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sp_v3.0_unigene8375 Contig 0.00 No other positions
sp_v3.0_unigene210333 Contig 0.00 No other positions
sp_v3.0_unigene17498 Contig 0.00 No other positions
sp_v3.0_unigene97528 Contig 0.60 No other positions
sp_v3.0_unigene32936 Contig 1.70 No other positions
sp_v3.0_unigene20851 Contig 1.70 No other positions
sp_v3.0_unigene11175 Contig 1.70 No other positions
sp_v3.0_unigene141970 Contig 2.30 No other positions
sp_v3.0_unigene635 Contig 2.30 No other positions
sp_v3.0_unigene102696 Contig 2.50 No other positions
sp_v3.0_unigene34168 Contig 3.80 No other positions
sp_v3.0_unigene146303 Contig 3.80 No other positions
sp_v3.0_unigene32842 Contig 4.30 No other positions
sp_v3.0_unigene94650 Contig 4.60 No other positions
sp_v3.0_unigene6164 Contig 4.60 No other positions
sp_v3.0_unigene30361 Contig 4.90 No other positions
sp_v3.0_unigene12670 Contig 6.00 No other positions
sp_v3.0_unigene34614 Contig 6.00 No other positions
sp_v3.0_unigene2372 Contig 6.00 No other positions
sp_v3.0_unigene143274 Contig 6.00 No other positions
sp_v3.0_unigene27035 Contig 6.00 No other positions
sp_v3.0_unigene4205 Contig 6.00 No other positions
sp_v3.0_unigene28114 Contig 6.90 No other positions
sp_v3.0_unigene37812 Contig 6.90 No other positions
sp_v3.0_unigene129871 Contig 6.90 No other positions

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