CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INRA_Ppinaster_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
AFLP
Contig
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INRA_Ppinaster_composite_2015 [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 116.30 cM
Features by Type:
6 SNP
295 Contig
1 AFLP
302 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 302.       of 13 | Next
Pinus pinaster - INRA_Ppinaster_composite_2015 - LG9
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sp_v3.0_unigene5792 Contig 0.00 No other positions
sp_v3.0_unigene32297 Contig 0.90 No other positions
sp_v3.0_unigene24960 Contig 0.90 No other positions
sp_v3.0_unigene144782 Contig 2.40 No other positions
sp_v3.0_unigene11452 Contig 2.40 No other positions
sp_v3.0_unigene8531 Contig 2.40 No other positions
sp_v3.0_unigene9275 Contig 2.40 No other positions
sp_v3.0_unigene27046 Contig 2.80 No other positions
sp_v3.0_unigene11174 Contig 2.80 No other positions
sp_v3.0_unigene144850 Contig 3.40 No other positions
sp_v3.0_unigene132973 Contig 3.70 No other positions
sp_v3.0_unigene5553 Contig 3.90 No other positions
sp_v3.0_unigene20032 Contig 4.70 No other positions
sp_v3.0_unigene209580 Contig 4.90 No other positions
sp_v3.0_unigene11425 Contig 5.90 No other positions
sp_v3.0_unigene209086 Contig 5.90 No other positions
sp_v3.0_unigene6619 Contig 5.90 No other positions
sp_v3.0_unigene32917 Contig 5.90 No other positions
sp_v3.0_unigene207926 Contig 5.90 No other positions
sp_v3.0_unigene32479 Contig 5.90 No other positions
sp_v3.0_unigene6144 Contig 5.90 No other positions
sp_v3.0_unigene3271 Contig 6.00 No other positions
sp_v3.0_unigene17491 Contig 7.50 No other positions
sp_v3.0_unigene34388 Contig 7.50 No other positions
sp_v3.0_unigene543 Contig 7.50 No other positions

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