CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-INRA_Ppinaster_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG11
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
AFLP
Contig
EST
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - INRA_Ppinaster_composite_2015 [ View Map Set Info ]
Map Name: LG11
Map Start: 0.00 cM
Map Stop: 130.30 cM
Features by Type:
257 Contig
2 AFLP
1 EST
12 SNP
272 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 272.       of 11 | Next
Pinus pinaster - INRA_Ppinaster_composite_2015 - LG11
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
sp_v3.0_unigene144259 Contig 0.00 No other positions
sp_v3.0_unigene34945 Contig 0.00 No other positions
sp_v3.0_unigene14877 Contig 2.50 No other positions
sp_v3.0_unigene27814 Contig 3.60 No other positions
sp_v3.0_unigene24306 Contig 3.80 No other positions
sp_v3.0_unigene140652 Contig 6.70 No other positions
sp_v3.0_unigene22534 Contig 10.10 No other positions
sp_v3.0_unigene31117 Contig 12.20 No other positions
sp_v3.0_unigene2117 Contig 14.60 No other positions
sp_v3.0_unigene140415 Contig 15.80 No other positions
sp_v3.0_unigene22934 Contig 16.40 No other positions
sp_v3.0_unigene7963 Contig 16.50 No other positions
CL1367Contig1_03_contig1-103 SNP 16.80 No other positions
sp_v3.0_unigene11930 Contig 16.80 No other positions
sp_v3.0_unigene6519 Contig 16.80 No other positions
sp_v3.0_unigene17261 Contig 16.90 No other positions
sp_v3.0_unigene37747 Contig 17.30 No other positions
sp_v3.0_unigene7951 Contig 17.30 No other positions
sp_v3.0_unigene6119 Contig 17.30 No other positions
sp_v3.0_unigene30601 Contig 17.30 No other positions
sp_v3.0_unigene7415 Contig 17.30 No other positions
sp_v3.0_unigene29434 Contig 17.40 No other positions
sp_v3.0_unigene7837 Contig 17.50 No other positions
sp_v3.0_unigene8957 Contig 18.30 No other positions
sp_v3.0_unigene1682 Contig 18.30 No other positions

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