CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Picea-INRA_Picea_composite_2015  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
Contig
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Picea - INRA_Picea_composite_2015 [ View Map Set Info ]
Map Name: LG10
Map Start: 0.00 cM
Map Stop: 172.11 cM
Features by Type:
38 SNP
164 Contig
202 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 202.       of 9 | Next
Picea - INRA_Picea_composite_2015 - LG10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
8748 SNP 21.20 No other positions
sp_v3.0_unigene22717 Contig 0.00 No other positions
sp_v3.0_unigene2877 Contig 0.67 No other positions
sp_v3.0_unigene6958 Contig 0.69 No other positions
sp_v3.0_unigene15158 Contig 3.90 No other positions
sp_v3.0_unigene9180 Contig 4.37 No other positions
sp_v3.0_unigene6529 Contig 5.03 No other positions
sp_v3.0_unigene6452 Contig 5.25 No other positions
sp_v3.0_unigene17584 Contig 5.81 No other positions
sp_v3.0_unigene7682 Contig 6.09 No other positions
sp_v3.0_unigene444 Contig 6.54 No other positions
sp_v3.0_unigene24142 Contig 6.70 No other positions
sp_v3.0_unigene11494 Contig 7.20 No other positions
sp_v3.0_unigene19122 Contig 7.75 Picea - INRA_Picea_composite_2015 - LG1 sp_v3.0_unigene19122 Contig 70.71 (cM) Automated name-based View Maps
sp_v3.0_unigene37588 Contig 7.95 No other positions
sp_v3.0_unigene17001 Contig 8.44 No other positions
sp_v3.0_unigene5321 Contig 8.78 No other positions
sp_v3.0_unigene6577 Contig 10.47 No other positions
sp_v3.0_unigene1103 Contig 11.12 No other positions
sp_v3.0_unigene17073 Contig 11.64 No other positions
sp_v3.0_unigene2333 Contig 11.91 No other positions
sp_v3.0_unigene18874 Contig 12.62 No other positions
sp_v3.0_unigene29653 Contig 13.52 No other positions
GQ03309-H18.2.1365 SNP 16.06 No other positions
sp_v3.0_unigene13240 Contig 17.80 No other positions

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