CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_12K_MarocxLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB [ View Map Set Info ]
Map Name: LG3
Map Start: 0.00 cM
Map Stop: 65.63 cM
Features by Type:
5 SNP
5 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 5 of 5.
Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG3
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp7490 SNP 0.00 Pinus pinaster - F1_SNP_9K_MarocxLandes_NTB - LG3 9k_snp7490 SNP 59.54 (cM) Automated name-based View Maps
9k_snp7435 SNP 5.23 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG3 9k_snp7435 SNP 80.07 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG3 9k_snp7435 SNP 75.67 (cM) Automated name-based View Maps
9k_snp4749 SNP 14.42 No other positions
9k_snp5045 SNP 24.41 No other positions
9k_snp7222 SNP 65.63 Pinus pinaster - F1_SNP_9K_MarocxLandes_NTB - LG3 9k_snp7222 SNP 125.80 (cM) Automated name-based View Maps

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