CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_12K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG5
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG5
Map Start: 0.00 cM
Map Stop: 119.51 cM
Features by Type:
10 SNP
10 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 10 of 10.
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp4831 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp4831 SNP 13.52 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp4831 SNP 18.52 (cM) Automated name-based View Maps
9k_snp7548 SNP 23.22 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp7548 SNP 43.35 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp7548 SNP 52.91 (cM) Automated name-based View Maps
9k_snp5795 SNP 33.72 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp5795 SNP 52.91 (cM) Automated name-based View Maps
9k_snp6944 SNP 47.77 Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG5 9k_snp6944 SNP 61.75 (cM) Automated name-based View Maps
9k_snp7187 SNP 48.30 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp7187 SNP 60.53 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp7187 SNP 88.44 (cM) Automated name-based View Maps
9k_snp5196 SNP 62.50 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp5196 SNP 119.93 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp5196 SNP 71.83 (cM) Automated name-based View Maps
9k_snp7244 SNP 68.61 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp7244 SNP 139.50 (cM) Automated name-based View Maps
9k_snp5434 SNP 88.89 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp5434 SNP 175.91 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp5434 SNP 99.98 (cM) Automated name-based View Maps
9k_snp5323 SNP 104.59 Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG5 9k_snp5323 SNP 111.89 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG5 9k_snp5323 SNP 191.05 (cM) Automated name-based View Maps
NA SNP 119.51 No other positions

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