CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 116.07 cM
Features by Type:
46 SNP
46 Total

Map Features

Restrict by Map:
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Items 1 to 25 of 46.       of 2 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp2886 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp2886 SNP 1.13 (cM) Automated name-based View Maps
9k_snp6070 SNP 0.96 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp6070 SNP 3.94 (cM) Automated name-based View Maps
9k_snp3213 SNP 5.29 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp3213 SNP 6.63 (cM) Automated name-based View Maps
9k_snp5966 SNP 10.26 No other positions
9k_snp2962 SNP 11.09 No other positions
9k_snp4003 SNP 14.41 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp4003 SNP 13.78 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG6 9k_snp4003 SNP 11.38 (cM) Automated name-based View Maps
9k_snp3318 SNP 22.17 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG6 9k_snp3318 SNP 17.77 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp3318 SNP 19.94 (cM) Automated name-based View Maps
9k_snp2535 SNP 24.08 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp2535 SNP 21.88 (cM) Automated name-based View Maps
9k_snp4472 SNP 24.08 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp4472 SNP 21.88 (cM) Automated name-based View Maps
9k_snp5067 SNP 24.08 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp5067 SNP 22.75 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG6 9k_snp5067 SNP 19.48 (cM) Automated name-based View Maps
9k_snp3612 SNP 24.08 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp3612 SNP 21.88 (cM) Automated name-based View Maps
9k_snp5679 SNP 25.06 No other positions
9k_snp86 SNP 40.12 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp86 SNP 36.87 (cM) Automated name-based View Maps
9k_snp7855 SNP 40.12 No other positions
9k_snp6565 SNP 41.48 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG6 9k_snp6565 SNP 34.37 (cM) Automated name-based View Maps
9k_snp5174 SNP 42.95 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp5174 SNP 35.76 (cM) Automated name-based View Maps
9k_snp3572 SNP 44.78 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG6 9k_snp3572 SNP 35.95 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp3572 SNP 41.44 (cM) Automated name-based View Maps
9k_snp7712 SNP 53.69 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp7712 SNP 53.58 (cM) Automated name-based View Maps
9k_snp7159 SNP 53.69 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp7159 SNP 53.41 (cM) Automated name-based View Maps
9k_snp5882 SNP 55.51 No other positions
9k_snp8262 SNP 58.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp8262 SNP 57.43 (cM) Automated name-based View Maps
9k_snp2874 SNP 58.65 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp2874 SNP 57.43 (cM) Automated name-based View Maps
9k_snp7293 SNP 63.47 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp7293 SNP 79.37 (cM) Automated name-based View Maps
9k_snp7270 SNP 65.12 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp7270 SNP 73.63 (cM) Automated name-based View Maps
9k_snp4874 SNP 65.12 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG6 9k_snp4874 SNP 73.63 (cM) Automated name-based View Maps

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