CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.




Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped




 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence
Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes




 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes




 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).




 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes









Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG7
Map Start: 0.00 cM
Map Stop: 153.06 cM
Features by Type:
59 SNP
59 Total

Map Features

Restrict by Map:
[ Download Map Data ]
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Items 1 to 25 of 59.       of 3 | Next
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp7787 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp7787 SNP 0.00 (cM) Automated name-based View Maps
9k_snp7482 SNP 9.98 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG7 9k_snp7482 SNP 0.00 (cM) Automated name-based View Maps
9k_snp1707 SNP 14.54 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp1707 SNP 18.00 (cM) Automated name-based View Maps
9k_snp102 SNP 29.47 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG7 9k_snp102 SNP 16.37 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp102 SNP 20.20 (cM) Automated name-based View Maps
9k_snp7608 SNP 42.61 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp7608 SNP 34.82 (cM) Automated name-based View Maps
9k_snp5607 SNP 57.24 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp5607 SNP 48.13 (cM) Automated name-based View Maps
9k_snp4731 SNP 61.35 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp4731 SNP 51.51 (cM) Automated name-based View Maps
9k_snp6770 SNP 62.34 No other positions
9k_snp231 SNP 66.04 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp231 SNP 61.52 (cM) Automated name-based View Maps
9k_snp1637 SNP 66.04 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp1637 SNP 71.48 (cM) Automated name-based View Maps
9k_snp234 SNP 66.04 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG7 9k_snp234 SNP 60.50 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp234 SNP 61.52 (cM) Automated name-based View Maps
9k_snp1303 SNP 66.04 No other positions
9k_snp4870 SNP 68.35 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp4870 SNP 68.76 (cM) Automated name-based View Maps
9k_snp4443 SNP 72.41 No other positions
9k_snp8734 SNP 73.35 No other positions
9k_snp7939 SNP 73.35 No other positions
9k_snp6039 SNP 78.86 No other positions
9k_snp2272 SNP 78.86 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp2272 SNP 92.02 (cM) Automated name-based View Maps
9k_snp3104 SNP 80.23 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp3104 SNP 90.88 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG7 9k_snp3104 SNP 69.71 (cM) Automated name-based View Maps
9k_snp884 SNP 80.23 No other positions
9k_snp1269 SNP 80.23 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp1269 SNP 90.88 (cM) Automated name-based View Maps
9k_snp1281 SNP 82.10 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG7 9k_snp1281 SNP 73.96 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp1281 SNP 94.48 (cM) Automated name-based View Maps
9k_snp5528 SNP 86.29 No other positions
9k_snp8068 SNP 86.29 No other positions
9k_snp1333 SNP 87.07 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG7 9k_snp1333 SNP 96.37 (cM) Automated name-based View Maps

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