CMap COMPARATIVE MAP VIEWER


The CMap Comparative Map Viewer allows a user to view and compare maps between and among species. See HELP for more information.



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General options

** Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.



Other options

 Map Options
 Map Options

Map Set Pinus pinaster-F1_SNP_9K_CorsexLandes_NTB  (Reference Set)
Min. Correspondence
Align Vertically
Stack
Maps LG9
Start
Stop
Magnification
Flipped



 Feature Options
 Feature Options

 Highlight Features  

 Feature Types
Feature Ignore Display if
Correspondence		 Always Display
SNP
Other
 

Show labels None Landmarks All
Collapse overlapping features No Yes



 Correspondence Options
 Correspondence Options

  Include Correspondence Types
Evidence Ignore Use Less than score Greater than score Score
Automated name-based
       

Aggregate Correspondences No 1 Line 2 Lines
Correspondence lines drawn to Feature Map
View Intra-Slot Correspondences No yes
Aggregate evidence types separately No yes



 Display Options
 Display Options
Map Size tiny small medium large Custom
Font Size Small Medium Large
Image Type PNG JPEG GIF SVG *
Clean View (no navigation buttons) No Yes
Hide the Legend No Yes

* SVG output for high-resolution printing only (no hyperlinks).



 Advanced Options
 Advanced Options
Draw maps using same scale No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps Predefined order Number of correspondences
Ignore image map sanity check No Yes








Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB [ View Map Set Info ]
Map Name: LG9
Map Start: 0.00 cM
Map Stop: 136.28 cM
Features by Type:
23 SNP
23 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Pinus pinaster - F1_SNP_9K_CorsexLandes_NTB - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
9k_snp4266 SNP 0.00 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp4266 SNP 0.00 (cM) Automated name-based View Maps
9k_snp8005 SNP 0.72 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp8005 SNP 2.12 (cM) Automated name-based View Maps
9k_snp8502 SNP 0.72 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp8502 SNP 2.12 (cM) Automated name-based View Maps
9k_snp2829 SNP 2.82 No other positions
9k_snp1563 SNP 5.80 No other positions
9k_snp6970 SNP 7.57 Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG9b 9k_snp6970 SNP 7.44 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp6970 SNP 5.46 (cM) Automated name-based View Maps
9k_snp7230 SNP 12.32 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp7230 SNP 13.43 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp7230 SNP 11.60 (cM) Automated name-based View Maps
9k_snp4909 SNP 12.32 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp4909 SNP 13.43 (cM) Automated name-based View Maps
9k_snp2842 SNP 14.62 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp2842 SNP 13.43 (cM) Automated name-based View Maps
9k_snp5516 SNP 32.30 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp5516 SNP 20.45 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp5516 SNP 27.91 (cM) Automated name-based View Maps
9k_snp7277 SNP 54.74 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp7277 SNP 32.73 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp7277 SNP 46.67 (cM) Automated name-based View Maps
9k_snp113 SNP 64.74 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp113 SNP 50.05 (cM) Automated name-based View Maps
9k_snp7320 SNP 66.67 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp7320 SNP 51.06 (cM) Automated name-based View Maps
9k_snp3046 SNP 69.85 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp3046 SNP 63.81 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp3046 SNP 51.06 (cM) Automated name-based View Maps
9k_snp5569 SNP 73.37 No other positions
9k_snp4195 SNP 73.37 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp4195 SNP 73.60 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp4195 SNP 59.32 (cM) Automated name-based View Maps
9k_snp4213 SNP 76.27 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp4213 SNP 57.55 (cM) Automated name-based View Maps
9k_snp6446 SNP 77.11 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp6446 SNP 67.08 (cM) Automated name-based View Maps
9k_snp3289 SNP 88.66 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp3289 SNP 77.00 (cM) Automated name-based View Maps
9k_snp150 SNP 97.17 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp150 SNP 80.08 (cM) Automated name-based View Maps
9k_snp7343 SNP 121.75 Pinus pinaster - F1_SNP_9K_12K_CorsexLandes_NTB - LG9 9k_snp7343 SNP 111.59 (cM) Automated name-based View Maps
Pinus pinaster - F1_SNP_9K_12K_MarocxLandes_NTB - LG9 9k_snp7343 SNP 2.16 (cM) Automated name-based View Maps
9k_snp7990 SNP 132.72 Pinus pinaster - F1_SNP_9K_CorsexMaroc_NTB - LG9 9k_snp7990 SNP 114.35 (cM) Automated name-based View Maps
9k_snp3714 SNP 136.28 No other positions

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